PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 297aa    MW: 33141.7 Da    PI: 7.0038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266156genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141465148
                     TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + + +G++    +W   +++ g++R++k+c++rw++yl
    MDP0000266156 14 RGPWSPEEDAALKSYLQSHGSDgtasNWIHLPKKAGLRRCGKSCRLRWLNYL 65
                     89************************************************97 PP

2Myb_DNA-binding45.91.3e-1472131246
                      SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++ ++ +q+G++                +W+ Ia++m+ gRt++++k++w++
    MDP0000266156  72 GGFTEEEDSIICNLYNQMGSRqyfltylhflnspnflRWSVIASYMP-GRTDNDVKNYWNT 131
                      569********************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.811969IPR017930Myb domain
SuperFamilySSF466898.2E-2211129IPR009057Homeodomain-like
SMARTSM007173.2E-101367IPR001005SANT/Myb domain
PfamPF002491.9E-131465IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-221572IPR009057Homeodomain-like
CDDcd001671.34E-71665No hitNo description
SMARTSM007172.1E-1170135IPR001005SANT/Myb domain
PROSITE profilePS5129410.42770137IPR017930Myb domain
PfamPF002496.9E-1272131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2173137IPR009057Homeodomain-like
CDDcd001671.11E-974131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRTPCCDKE NVKRGPWSPE EDAALKSYLQ SHGSDGTASN WIHLPKKAGL RRCGKSCRLR  60
WLNYLRPDIK HGGFTEEEDS IICNLYNQMG SRQYFLTYLH FLNSPNFLRW SVIASYMPGR  120
TDNDVKNYWN TKLKKKLLGG KIKNISSKEP TIANNANFFG IPEAEKPQDS AFSTSEPQVP  180
STLQMLYDVX SGLSADNQTM SLNPDQLYNP KLSGFSDLGA RSRRNYSTTV SLSQEGSSIS  240
DSSSMAGNLY LDQDSGFLMD YGFGVAYDNN VNHYGMSFGD KTSEVGPTGC TDFGDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-201413727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285421e-42FR828542.1 Rosa rugosa mRNA for putative MYB transcription factor (myb9 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377932.10.0PREDICTED: transcription factor RAX1-like
TrEMBLM5XR321e-115M5XR32_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s25060.15e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-59myb domain protein 68